InterMine

InterMine
Content
Description Open source data warehouse system for the integration and analysis of biological data.
Organisms varied
Access
Website http://www.intermine.org/
Download URL https://github.com/intermine/intermine
Web service URL http://iodocs.apps.intermine.org/
Miscellaneous
License LGPL 2.1
Data release
frequency		 Quarterly
Version 1.6.6
Bookmarkable
entities		 Yes

InterMine is a powerful open source data warehouse system, licensed under the LGPL 2.1. InterMine is used to create databases of biological data accessed by sophisticated web query tools. InterMine can be used to create databases from a single data set or can integrate multiple sources of data. Support is provided for several common biological formats and there is a framework for adding your own data. InterMine includes an attractive, user-friendly web interface that works 'out of the box' and can be easily customised for your specific needs.[1]

InterMine makes it easy to integrate multiple data sources into a single data warehouse. It has a core data model based on the sequence ontology and supports several biological data formats, allowing sysadmins to configure which organisms or data files are required. It is easy to extend the data model and integrate your own data, with a web service API, clients in seven different languages, and an XML format to help import custom data.

As an active open source project, InterMine maintains a developer mailing list and thorough developer and user documentation.

Supported data formats

Clients

Web clients allow users to access the data programatically with minimal effort, and are available for perl, python, ruby, javascript, Java, and R.


Web application

The InterMine web application allows creation of custom bioinformatics queries, includes template queries (web forms to run 'canned' queries). Users can upload and operate on lists of data. It is possible to configure/create widgets to analyse lists with graphs and enrichment statistics.

An admin user can publish new template queries, change report pages and create public lists at any time without any programming. Many aspects of the web app can be configured and branded.

Current projects (not exhaustive list)

References

  1. ↑ http://www.intermine.org

External links

This article is issued from Wikipedia - version of the 5/23/2016. The text is available under the Creative Commons Attribution/Share Alike but additional terms may apply for the media files.